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SRX22224953: GSM7865604: TH-_2; Petromyzon marinus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29M spots, 3G bases, 944.7Mb downloads

External Id: GSM7865604_r1
Submitted by: Caltech
Study: Neural crest origin of sympathetic neurons at the dawn of vertebrates
show Abstracthide Abstract
he neural crest is an embryonic stem cell population unique to vertebrates whose expansion and diversification are thought to have promoted vertebrate evolution by enabling emergence of novel cell types and structures like jaws and peripheral ganglia2. While basal vertebrates have sensory ganglia, convention has it that trunk sympathetic chain ganglia arose only in jawed vertebrates. In contrast, here we report the presence of trunk sympathetic neurons in the sea lamprey, Petromyzon marinus, an extant jawless vertebrate. These neurons arise from sympathoblasts near the dorsal aorta that undergo noradrenergic specification via a transcriptional program homologous to that described in gnathostomes. Lamprey sympathoblasts populate the extracardiac space and extend along the length of the trunk in bilateral streams, expressing the catecholamine biosynthetic pathway enzymes tyrosine hydroxylase and dopamine ?-hydroxylase. CM-DiI lineage tracing analysis further confirmed that these cells derive from the trunk neural crest. RNA-seq of isolated ammocete trunk sympathoblasts revealed gene profiles characteristic of sympathetic neuron function. Our findings challenge prevailing dogma which posits that sympathetic ganglia are a gnathostome innovation, instead suggesting that a late-developing rudimentary sympathetic nervous system may have been characteristic of the earliest vertebrates. Overall design: To gain insight into the molecular identity of lamprey sympathetic neurons, we harvested bilateral tracts of cells—presumed to be the sympathetic chains—from the trunks of lamprey ammocetes. We further selected for TH+ and TH- cells and subjected them to RNA sequencing using Fixed and Recovered Intact Single Cell RNA-seq (FRISCR) followed by differential expression analysis.
Sample: TH-_2
SAMN37984768 • SRS19279943 • All experiments • All runs
Library:
Name: GSM7865604
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using the NucleoSpin RNA SX kit (Takara), and cDNAs were synthesized using the SMARTseq v4 ultra low input kit (Takara) RNA libraries for RNA-seq were prepared using NEBext Ultra II Kit (NEB) following manufacturer's protocols
Runs: 1 run, 29M spots, 3G bases, 944.7Mb
Run# of Spots# of BasesSizePublished
SRR2652140729,024,3583G944.7Mb2024-02-22

ID:
30183602

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